projects

Code-Heavy stuff

snipar

snipar (single nucleotide imputation of parents) is a Python package for inferring identity-by-descent (IBD) segments shared between siblings, imputing missing parental genotypes, and for performing family based genome-wide association and polygenic score analyses using observed and/or imputed parental genotypes.
The imputation method and the family-based GWAS and polygenic score models are described in Young et al. 2022.
You can find the project here.

poissonreg

A simple library. for sparse poisson regression, based on PyTorch.